Have You Gone Viral?
Here’s all the basic information you need to know about viruses.
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What do you actually know about viruses?
In my experience, most people just know that viruses infect them and make them sick. So I thought in these trying times with COVID-19, maybe it was a good idea for us to all learn some basic viral biology.
There’s so much information out there about COVID-19 that I’m not going to say much about it. In this article, you’ll learn about the main categories of viruses, how they reproduce, how they infect cells, physical characteristics, and much more.
So let’s get started.
What are viruses?
Viruses are infectious particles. We call them particles because they are not the same as cells and here’s why.
They lack any of the normal internal subcellular “machinery” that all other living organisms’ cells have. This includes the structures needed to make proteins or the proteins that are needed for independent metabolism and to make new copies of their nucleic acid genome.
Because of this, they fall into the category of what we call obligate intracellular parasites. They can only reproduce inside a host cell.
Are they alive?
The perennial viral question. It depends how you define life so some folks say yes and some say no. As we stated above, they need to be inside a host cell to reproduce. No host cell available, no more viruses made.
But they do contain all the instructional material necessary to make new copies of themselves once inside a host. So is that a form of life? You get to decide for yourself.
How big are viruses?
This is a very important question to answer. If you want to protect yourself from getting a viral infection, you need to either destroy or deactivate the viral particles or hide behind a barrier that the virus can’t penetrate.
If you’re constructing a barrier you need to make sure that the pore size is small enough to be an effective barrier. And know what CAN pass through it.
Viruses range in size from 20 nanometres (nm) up to about 250 nm. But what does that actually mean? How can I “picture” that? Well, the smallest thing we can see with a light microscope (you know, the kind you used in high school or college introductory biology) is about 500 nm.
The width of a human hair is 80,000 to 100,00 nm wide.
Since the largest virus is around 250 nm, it would take about 400 of them stacked up on top of each other to equal the width of a single human hair!
And a few million of the 20 nm large viruses will fit on the head of a pin!
Now think for a moment about most of the face masks people wear these days to guard against COVID-19. Do you think they can filter out something that small? Or even slow them down?
Nope, they can’t.
You can wear it if it makes you feel better to do so but those kind don’t serve any real purpose.
From Wikipedia “Surgical masks are not designed to protect the wearer from inhaling airborne bacteria or virus particles…”
*Note: You CAN wear an N95 filter mask and ensure that it is TIGHTLY fitted on your face with no open air spaces. The pore size of the N95 filter prevents you from inhaling viral particles.
So let’s talk a bit about what makes a virus.
Viral structure
The general structure of most viruses is quite simple. They have a piece of DNA or RNA (their genome) which is packaged inside a capsule made of proteins and called a capsid.
Then, depending on what kind of virus it is, the capsid may be enclosed in a membranous structure called an envelope.
When there is an envelope, it usually contains additional molecules that protrude from the envelope. Viruses like SARS or COVID-19 are called coronaviruses because the molecules that stick out make them look like our sun with coronal flares.
The figure below is an electron microscope picture of typical coronavirus particles. You can see the protein molecules that stick out from the envelope quite nicely.
Kinds of Virus
Viruses were originally classified into 2 types, DNA viruses and RNA viruses, and as we learned more, we discovered it wasn’t quite that simple!
By looking at their genomes and the proteins included in the capsid, modern viral taxonomy has distinguished 7 different classes of viruses.
This figure shows the 7 classes of viruses. Here’s what the abbreviations mean if you’re curious but I’m not going to get into any detail about them in this article. Too technical! ds is double-stranded, ss is single-stranded, (+) is the plus strand, (-) is the minus strand, RT is reverse transcriptase.
Viral structure
What do viruses look like and what are they made of?
In Biology, we call the appearance of an entity its morphology. As an example, human morphology includes a trunk (abdomen and chest) supported on 2 legs which also has 2 arms that extend from it on either side. And then there is a short tube at the top of the trunk that has another structure that has several openings and has 2 eyes, a nose and a mouth and 2 ears etc. You get the idea. It can get very detailed! I barely started here.
Here’s a lovely figure that shows just how different the morphology for some of the 7 different types mentioned above can be.
How do viruses infect their hosts and reproduce?
Again, I don’t want to get too technical here. This is not a course to teach you everything about viruses but is a quick overview of what viruses are and how they do what they do.
Because different kinds of viruses infect all the other kinds of creatures on this planet, there is no one method of infection that they all use. And even looking just at the ones that infect humans, there are a few different ways they do this.
One of the most common ways viruses infect humans is by essentially “merging” with the cells to enter them. How did they come to be able to do that?
This is sort of a chicken and egg question because we don’t exactly know how viruses evolved this method. What we do know is the ones that use this method have a membranous coating that they picked up from the last cell they invaded.
To best get the idea, let’s start with the virus already having entered the cell. Enzymes inside the cell digest envelope (if there is one) and the capsid, which releases the viral genomic nucleic acids (DNA or RNA). Now the genome, which contains the “instructions” to make the proteins that make more viral genomes, are “read” by the cell’s “machinery” that it uses to read its own genome. But in this case, it makes the proteins that are encoded in the viral genome.
These viral proteins now co-opt other parts of the subcellular “production line” and use them to manufacture more viral genomes, viral capsid proteins and envelope glycoproteins.
The capsid proteins then assemble and form new capsids around a strand of new viral genome, one or two genomes per capsid. At the same time, the cell transports the new viral envelope glycoproteins to its cellular membrane. The new capsids with genomes are also transported to the cell membrane where they bud from the cell and while doing so, surround themselves with host cell membrane which also contains viral envelope proteins.
Here’s a nice figure to summarize all that information.
Now, it turns out that these viral glycoproteins in the envelope actually bind to receptor molecules embedded in that particular type of cell’s membrane. All of those cells, let’s use our lung cells as an example, have that receptor molecule in and on their membranes.
So the new viral particles’ envelopes bind to the same receptors present on other nearby cells and the cycle repeats over and over. In some cases, the original host cell is killed but in others, it is not. But even if it is not killed, while it is making new viral particles, it cannot perform the function it was originally designed for nearly as well, if at all, and that plus the response from the immune system, often inflammation, is what causes the sickness or disease the creature suffers from. Especially when a high percentage of that particular cell type is infected.
To stay with the virus that infected our lungs, its envelope only contains glycoproteins recognized by receptors on other lung cells. It is not recognized by the liver or brain or kidney or any other tissue unless they actually have the same receptor. This is why viruses are so specific. For example, the hepatitis virus only infects liver tissue cells and HIV only infects a specific kind of immune cell called a T cell. In the case of HIV, it does kill this class of T cells which are a critical component of our immune system. Without these T cells, the whole immune system is disabled.
And in some cases, the virus can actually remain latent in the cell. Herpes virus is an example of this. It actually makes copies of itself inside the cell nucleus and when it buds from the nucleus, its envelope is made from the nuclear membrane, not the external plasma membrane. And some copies do not actually bud out of the nucleus but remain inside it as minichromosomes.
These minichromosomes stay there until some kind of stress signal activates them to open up and start producing more virus particles. These particles then cause blisters such as cold sores or genital sores. And that’s why herpes infection is life-long. Some particles always remain behind just “waiting” to become active again!
What are other viral hosts?
There are viruses found in every other life form that has been investigated. All the other creatures in the plant and animal kingdoms, and they also infect other microorganisms including bacteria and archaea, single-celled organisms that are not bacteria.
Viruses that infect bacteria are called bacteriophages. “The term was derived from “bacteria” and the Greek φαγεῖν (phagein), meaning “to devour”. They are often referred to simply as phages.
Some of the earliest molecular biology studies used these phage particles and their bacterial hosts as model systems to begin to understand basic molecular genetic and genomic biology.
What else do I need to know?
Actually, I think I’ve covered all the basic biology of viruses you need to feel a bit more knowledgeable about them.
You know how small they are, what the constituents are that make a virus particle, the different classes of viruses, how they infect humans, how they reproduce and the different organisms they use as hosts.
Any more information would start to get us into serious viral biology.
Note: I have specifically avoided talking about the COVID-19 coronavirus because there is so much information out there, I would just be repeating everything everyone else has already written about it.I hope you found this interesting and worth spending a few minutes of your time to read.
Until next time,
Rich
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